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home search browse help download blog submit mirna count: 38589 entries release 22 : march 2018 search by mirna name or keyword download published mirna data download page | ftp site latest blog posts by sam (june 7, 2018) microrna gene ontology annotations you might have noticed some additional information on the mature mirna pages in the last few weeks. see for example: http://.org/cgi-bin/mature.pl?mature_acc=mimat0000123 http://.org/cgi-bin/mature.pl?mature_acc=mimat0000069 the new section “quickgo function” contains a set of high quality manual annotations of gene ontology terms for mature mirnas, the vast majority of which come from the work of rachael huntley et [...] read more... -- by sam (march 12, 2018) 22 release after repeated and unreasonable delay, 22 is finally released. as you might expect with such a long gap, the number of sequences in the database has jumped significantly — by over a third. the vast majority of the increase comes from new microrna annotations in species not previous represented in the database. indeed, there [...] read more... -- : the microrna database provides the following services: the database is a searchable database of published mirna sequences and annotation. each entry in the sequence database represents a predicted hairpin portion of a mirna transcript (termed mir in the database), with information on the location and sequence of the mature mirna sequence (termed mir). both hairpin and mature sequences are available for searching and browsing , and entries can also be retrieved by name, keyword, references and annotation. all sequence and annotation data are also available for download . the registry provides mirna gene hunters with unique names for novel mirna genes prior to publication of results. visit the help pages for more information about the naming service. the targets database and pipeline has been rebranded as microcosm, and is now hosted at the ebi . the microcosm resource continues to be maintained by the enright group . currently links mirnas to targets predicted by microcosm, targetscan and pictar , and aims to provide a more extensive target prediction aggregation service in the future. -- to receive email notification of data updates and feature changes please subscribe to the announcements mailing list . any queries about the website or naming service should be directed at @manchester.ac.uk . is managed by the griffiths-jones lab at the faculty of biology, medicine and health , university of manchester with funding from the bbsrc . was previously hosted and supported by the wellcome trust sanger institute . references if you make use of the data presented here, please cite the following articles in addition to the primary data sources: : annotating high confidence micrornas using deep sequencing data . kozomara a, griffiths-jones s. nar 2014 42:d68-d73 : integrating microrna annotation and deep-sequencing data . kozomara a, griffiths-jones s. nar 2011 39:d152-d157 : tools for microrna genomics . griffiths-jones s, saini hk, van dongen s, enright aj. nar 2008 36:d154-d158 : microrna sequences, targets and gene nomenclature . griffiths-jones s, grocock rj, van dongen s, bateman a, enright aj. nar 2006 34:d140-d144 the microrna registry . griffiths-jones s. nar 2004 32:d109-d111 the following publications provide guidelines on mirna annotation: a uniform system for microrna annotation . ambros v, bartel b, bartel dp, burge cb, carrington jc, chen x, dreyfuss g, eddy sr, griffiths-jones s, marshall m, matzke m, ruvkun g, tuschl t. rna 2003 9(3):277-279 criteria for annotation of plant micrornas . meyers bc, axtell mj, bartel b, bartel dp, baulcombe d, bowman jl, cao x, carrington jc, chen x, green pj, griffiths-jones s, jacobsen se, mallory ac, martienssen ra, poethig rs, qi y, vaucheret h, voinnet o, watanabe y, weigel d, zhu jk. plant cell. 2008 20(12):3186-3190 comments, questions? email @manchester.ac.uk

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